SEARCH
JASPAR matrix models:
ID name species class family Sequence logo
MA0008.1  HAT5  Arabidopsis thaliana   Helix-Turn-Helix  Homeo 
MA0020.1  Dof2  Zea mays   Zinc-coordinating  Dof 
MA0021.1  Dof3  Zea mays   Zinc-coordinating  Dof 
MA0034.1  Gamyb  Hordeum vulgare   Helix-Turn-Helix  Myb 
MA0044.1  HMG-1  Pisum sativum   Other Alpha-Helix  High Mobility Group box (HMG) 
MA0045.1  HMG-I/Y  Pisum sativum   Other Alpha-Helix  High Mobility Group box (HMG) 
MA0053.1  MNB1A  Zea mays   Zinc-coordinating  Dof 
MA0054.1  myb.Ph3  Petunia x hybrida   Helix-Turn-Helix  Myb 
MA0064.1  PBF  Zea mays   Zinc-coordinating  Dof 
MA0082.1  squamosa  Antirrhinum majus   Other Alpha-Helix  MADS 
MA0096.1  bZIP910  Antirrhinum majus   Zipper-Type  Leucine Zipper 
MA0097.1  bZIP911  Antirrhinum majus   Zipper-Type  Leucine Zipper 
MA0120.1  id1  Zea mays   Zinc-coordinating  BetaBetaAlpha-zinc finger 
MA0121.1  ARR10  Arabidopsis thaliana   Helix-Turn-Helix  Myb 
MA0123.1  abi4  Zea mays   Beta-Hairpin-Ribbon  AP2 MBD-like 
MA0127.1  PEND  Pisum sativum   Zipper-Type  Leucine Zipper 
MA0128.1  EmBP-1  Triticum aestivum   Zipper-Type  Leucine Zipper 
MA0129.1  TGA1A  Nicotiana sp.   Zipper-Type  Leucine Zipper 
MA0548.1  AGL15  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0549.1  BES1  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0550.1  BZR1  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0551.1  HY5  Arabidopsis thaliana   Zipper-Type  Leucine Zipper 
MA0552.1  PIL5  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0553.1  SMZ  Arabidopsis thaliana   AP2-ERF  AP2-ERF 
MA0554.1  SOC1  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0555.1  SVP  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0556.1  AP3  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0557.1  FHY3  Arabidopsis thaliana   -  - 
MA0558.1  FLC  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0559.1  PI  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0560.1  PIF3  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0561.1  PIF4  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0562.1  PIF5  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0563.1  SEP3  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0564.1  ABI3  Arabidopsis thaliana   EcoRII fold  ABI3VP1 
MA0565.1  FUS3  Arabidopsis thaliana   EcoRII fold  ABI3VP1 
MA0566.1  MYC2  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0567.1  ERF1  Arabidopsis thaliana   Beta-Hairpin-Ribbon  AP2 MBD-like 
MA0568.1  MYC3  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0569.1  MYC4  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0570.1  ABF1  Arabidopsis thaliana   Zipper-Type  Leucine Zipper 
MA0005.2  AG  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0571.1  ANT  Arabidopsis thaliana   Beta-Hairpin-Ribbon  AP2 MBD-like 
MA0572.1  ATHB1  Arabidopsis thaliana   Helix-Turn-Helix  Homeo 
MA0110.2  ATHB5  Arabidopsis thaliana   Helix-Turn-Helix  Homeo 
MA0573.1  ATHB9  Arabidopsis thaliana   Helix-Turn-Helix  Homeo 
MA0574.1  AtMYB15  Arabidopsis thaliana   Helix-Turn-Helix  Myb 
MA0575.1  AtMYB77  Arabidopsis thaliana   Helix-Turn-Helix  Myb 
MA0576.1  AtMYB84  Arabidopsis thaliana   Helix-Turn-Helix  Myb 
MA0577.1  AtSPL3  Arabidopsis thaliana   Zinc-coordinating  SBP 
MA0578.1  AtSPL8  Arabidopsis thaliana   Zinc-coordinating  SBP 
MA0579.1  CDC5  Arabidopsis thaliana   Helix-Turn-Helix  Myb 
MA0580.1  DYT1  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0581.1  LEC2  Arabidopsis thaliana   EcoRII fold  ABI3VP1 
MA0582.1  RAV1  Arabidopsis thaliana   Beta-Hairpin-Ribbon  AP2 MBD-like 
MA0583.1  RAV1 (var.2)  Arabidopsis thaliana   EcoRII fold  ABI3VP1 
MA0584.1  SEP1  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0001.2  SEP4  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0585.1  SHP1  Arabidopsis thaliana   Other Alpha-Helix  MADS 
MA0586.1  SPL14  Arabidopsis thaliana   Zinc-coordinating  SBP 
MA0587.1  TCP16  Arabidopsis thaliana   Zipper-Type  Helix-Loop-Helix 
MA0588.1  TGA1  Arabidopsis thaliana   Zipper-Type  Leucine Zipper 
MA0589.1  ZAP1  Arabidopsis thaliana   -  WRKY 
MA0590.1  LFY  Arabidopsis thaliana   Helix-Turn-Helix  LEAFY 
 
ANALYZE selected matrix models:
selected models using STAMP
Create RANDOM matrix models based on selected models
Number of matrices:    Format:
Create models with PERMUTED columns from selected:
Type: Format:
SCAN this (fasta-formatted) sequence with selected matrix models
Relative profile score threshold   %